BAli---Phy

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Stable Releases

We provide both source code and binary executables. We currently provide executables for Windows, Mac OS X, and Linux. If you provide us with additional executables then we will post these as well. Some additional software may be required.

• 2.0.1: source (5.7M) - What's new?
  • Linux
    • 32-bit: Pentium 3 (27M) | Pentium4 (27M)
    • 64-bit: 64-bit (32M)
  • OS X
    • 10.4 (and 10.3.9): G4 (11M) | G5 (12M) | Intel (11M)
  • Windows
    • Cygwin32: Pentium 3 (20M) | Pentium 4 (20M)

• 2.0.0: source (5.7M) - What's new?
  • Linux
    • 32-bit: Pentium 3 (27M) | Pentium4 (27M)
    • 64-bit: 64-bit (32M)
  • OS X
    • 10.4 (and 10.3.9): G4 (??M) | G5 (??M) | Intel (9.0M)
    • 10.3: G4 (9.4M) | G5 (9.4M)
  • Windows
    • Cygwin32: Pentium 3 (20M) | Pentium 4 (20M)

• 1.9.8: source (377k)
  • Windows: Pentium 3 (12M) | Pentium 4 (12M)
  • Linux: Pentium 4 (43M)
  • OS X
    • 10.4 (and 10.3.9): G4 (6.4M) | G5 (6.4M) | Intel (5.2M)
    • 10.3: G4 (32M)
    • GNUmakefile

• 1.9.7: source (351k)
  • Linux/P4 (22M)

• 1.9.6: source (325k)
  • Linux/P4 (39M)

Mac OS X users note: some browsers may automatically append a '.gtar' to the end of these files. Uncompression tool 'tar' will still recognize and uncompress these files.

Requirements

BAli-Phy should run on any hardware with any modern operating system, including Linux, Windows, and Mac OS X. Some additional software must be installed, such as cygwin on Windows. To see the requirements in detail, view these sections in the Users Guide:

1. Pre-requisites

1. Hardware Requirements
2. Operating System requirements
   1. Linux and Unix
   2. Windows
   3. Mac OS X
3. Software Requirements
   1. Compilation Requirements
   2. Requirements for analyzing BAli-Phy Output
   3. Recommendations for analysis and documentation

Compilation

Note that most people won't need to compile BAli-Phy - you can just use the precompiled binaries posteed above.

To compile BAli-Phy, first download the source code posted above. Then see the section in the User's Guide on compilation:

• 2. Compiling BAli-Phy

"Live" Source Code (SVN)

Snapshots of current BAli-Phy source code can be obtained using subversion (SVN). SVN is like CVS, but better. These snapshots contain unreleased changes. The "development" repository contains significant improvements (and presumably new bugs). The "stable" repository contains only small bugfixes, and so is more stable.

• Development SVN
  http://centromere.statgen.ncsu.edu/svn/Project/bali-phy/trunk
• Stable SVN
  http://centromere.statgen.ncsu.edu/svn/Project/bali-phy/branches/2.0

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