User's Guide
Available formats:
Table of Contents
- Pre-requisites
- Compiling BAli-Phy
- Installation
- Running the program
- Command-line options
- Examples
- Input
- Models
- Substitution Models (Advanced)
- Output
- Convergence and Mixing: Is it done yet?
- Analyzing the output
- Tuning the Markov Chain
- Auxiliary tools
- Frequently Asked Questions (FAQ)
Mailing Lists
bali-phy-announce
bali-phy-announce is a low-volume mailing list for announcements of new BAli-Phy versions. Subscribe if you want to be notified when a new version is released.
bali-phy-users@googlegroups.com
bali-phy-users is a list for asking and answering questions about using bali-phy. Just send e-mail to bali-phy-users@googlegroups.com if you have questions!