Publications |
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59. Filippo Posta and Tom Chou, A mathematical model for intercellular signaling during epithelial wound healing, Submitted to: Journal of Theoretical Biology, (2009). (pdf) 58. Sarah A. Nowak and Tom Chou, Dynamic extraction of lipid tethers from cell membranes, Submitted to: Physical Biology, (2009). (pdf) 57. Benjamin H. Shargel and Tom Chou, Fluctuation Theorems for Entropy Production and Heat Dissipation in Periodically Driven Markov Chains, J. Stat. Phys., 137, 165-188, (2009). (pdf) 56. M. D'Orsogna, and Tom Chou, Optimal cytoplasmic transport in viral infections, Submitted to: PLoS One, (2009). (pdf) 55. F. Posta, M. D'Orsogna, and Tom Chou, Enhancement of cargo processivity by cooperating molecular motors, Physical Chemistry and Chemical Physics, 11, 4851-4869,(2009). PMID:19506760 (pdf) 54. Tom Chou, Enhancement of charged macromolecule capture by nanopores in a salt gradient, J. Chem. Phys., 131, 034703, (2009). PMID:19624217 (pdf) 53. K. G. Lassen, et al., Elite suppressor-derived HIV-1 envelope glycoproteins exhibit reduced entry efficiency and kinetics, PLoS Pathogens , 5, e1000377, (2009). PMCID:PMC2661022 (pdf) 52. Pak-Wing Fok and Tom Chou, Accelerated search kinetics mediated by redox reactions of DNA repair enzymes, Biophys. J., 96,3949-3958, (2009). PMID:19450467 (pdf) 51. Pak-Wing Fok, Chin-Lin Guo,and Tom Chou, Charge-transport-mediated recruitment of DNA repair enzymes, J. Chem. Phys., 129, 235101, (2008). PMID:19102557 (pdf) 50. Sarah A. Nowak, Buddhapriya Chakrabarti, Tom Chou, and Ajay Gopinathan, Frequency-dependent Chemotactic Target Selection, Submitted to: Physical Biology, (2009). (pdf) 49. Sarah A. Nowak and Tom Chou, Mechanisms of receptor/coreceptor-mediated entry of enveloped viruses, Biophysical Journal, 96, 2624-2636, (2009). PMID:19348746 (pdf) 48. S. H. Johnston, M. A. Lobritz, S. Nguyen, K. Lassen, S. Delair, F. Posta, Y. J. Bryson, E. J. Arts, Tom Chou, and Benhur Lee, A quantitative metric reveals differential CD4/CCR5 usage patterns amongst HIV-1 and SIV strains, J. Virology, 83, 11016-11026, (2009). PMID:19692480 47. Sarah A. Nowak and Tom Chou, Membrane Lipid Segregation in Endocytosis, Phys. Rev. E,78, 021908, (2008). (pdf) 46. Pak-Wing Fok, and Tom Chou, Interface Growth Driven by Surface Kinetics and Convection, SIAM Appl. Math., 70, 24-39, (2009). (pdf) 45. K. S. Kim, Tom Chou, and Joseph Rudnick, Degenerate ground-state lattices of membrane inclusions, Phys. Rev. E, 78, 011401, (2008). PMID:18763950 (pdf) 44. Amit Lakhanpal and Tom Chou, Brownian ratchets driven by asymmetric nucleation of hydrolysis waves, Phys. Rev. Lett., 99, 248302, (2007). PMID:18233496 (pdf) 43. Sarah A. Nowak, Pak-Wing Fok, and Tom Chou, Dynamic Boundaries in Asymmetric Exclusion Processes, Phys. Rev. E, 76, 031135, (2007). PMID:17930227 (pdf) 42. Tom Chou, Stochastic entry of enveloped viruses: Fusion vs. endocytosis, Biophys. J., 93, 1116-1123, (2007). PMCID:PMC1929032 (pdf) 41. Tom Chou, Peeling and Sliding in Nucleosome Repositioning, Phys. Rev. Lett., 99, 058105, (2007). PMID:17930799 (pdf) 40. Tom Chou and M. R. D'Orsogna, Multistage adsorption of diffusing macromolecules and viruses, J. Chem. Phys., 127, 105101, (2007). PMID:17867780 (pdf) 39. M. R. D'Orsogna, Tom Chou, and Tibor Antal, Exact steady-states for translocation ratchets driven by random sequential adsorption, J. Phys. A, 40, 5575-5584, (2007). PMCID:PMC2600482 (pdf) 38. Tom Chou, Band gaps and the Kelvin-Helmholtz instability, Physical Rev. E, 75, 016315, (2007). PMID:17358261 (pdf) 37. Greg Lakatos, J. D. O'Brien, Tom Chou, Hydrodynamic solutions of 1D exclusion processes with spatially varying hopping rates, J. Phys. A, 39, 2253-2264, (2006). (pdf) 36. Greg Lakatos, Tom Chou, Birger Bergersen, and Gren N. Patey, First passage times of driven DNA hairpin unzipping. Physical Biology, 2, 166-174, (2005). PMID:16224122 (pdf) 35. Maria R. D'Orsogna and Tom Chou, First passage and cooperativity of queuing kinetics, Physical Review Letters, 95, 170603, (2005). PMID:16383812 (pdf) 34. Greg Lakatos, Tom Chou, and Anatoly Kolomeisky, Steady-state properties of a totally asymmetric exclusion process with periodic structure, Phys. Rev. E, 71 , 011103, (2005). PMID:15697576 (pdf) 33. Maria R. D'Orsogna and Tom Chou, Interparticle gap distributions on one-dimensional lattices. Journal of Physics A, 38, 531-542, (2005). (pdf) 32. Sally M. Blower and Tom Chou, Modelling the emergence of the "Hot Zones:" tuberculosis and the amplification dynamics of drug resistance, Nature Medicine, 10, 1111-1116, (2004). PMID:15378053 (pdf) 31. Tom Chou, Water alignment, dipolar interactions, and multiple proton occupancy during water-wire proton transport, Biophys. J., 86, 2827-2836, (2004). PMCID:PMC1304152 (pdf) 30. Tom Chou and Greg Lakatos, Clustered Bottlenecks in mRNA translation and protein synthesis, Phys. Rev. Lett. 93, 198101, (2004). PMID:15600884 (pdf) 29. William J. Foster and Tom Chou, Physical mechanisms of gas and perfluron retinopexy and sub-retinal fluid displacement, Physics in Medicine and Biology, 49, 2989-2997, (2004). PMID:15285260 (pdf) 28. Maria D'Orsogna and Tom Chou, Chiral molecule adsorption on helical polymers, Phys. Rev. E 69, 021805, (2004). PMID:14995481 (eps) 27. Kevin Klapstein, Tom Chou, and Robijn Bruinsma, Physics of RecA-mediated homologous recognition, Biophysical Journal, 87, 1466-1477, (2004). PMCID:PMC1304555 (pdf) 26. Maria D'Orsogna, M. Suchard, and Tom Chou, Interplay of chemotaxis and chemokinesis mechanisms in bacterial dynamics, Phys. Rev. E 68, 021925, (2003). PMID:14525024 (pdf) 25. Guillaume Bal and Tom Chou, On the reconstruction of diffusions using a single first-exit time distribution, Inverse Problems, 20, 1053-1065, (2003). (pdf) 24. Tom Chou, Ribosome recycling, diffusion, and mRNA loop formation in translational regulation, Biophysical Journal, 85, 755-773, (2003). PMCID: PMC1303200 (pdf) 23. Tom Chou, An exact theory of histone-DNA adsorption and wrapping, Europhysics Letters, 62, 753-759, (2003). (pdf) 22. G. Lakatos and Tom Chou, Totally asymmetric exclusion processes with particles of arbitrary size, J. Phys. A: Math. Gen., 36, 2027-2041, (2003). (pdf) 21. Tom Chou, An interacting spin-flip model for one-dimensional proton conduction, J. Phys. A: Math. Gen., 35, 4515-4526, (2002). (pdf) 20. Tom Chou, Geometry-Dependent Electrostatics near Contact Lines, Phys. Rev. Lett., 87(10), 106101, (2001). PMID:11531488 (pdf) 19. M. P. McGee and Tom Chou, Surface-dependent Coagulation Enzymes: Flow Kinetics of Factor Xa Generation on Live Cell Membranes, J. Biol. Chem., 276, 7827-7835, (2001). PMID:11108710 (pdf) 18. Tom Chou, K. Kim, and G. Oster , Statistical thermodynamics of membrane bending mediated protein-protein attractions, Biophys. J., 80, 1075-1087, (2001). PMCID:PMC1301305 (pdf) 17. Guillaume Bal and Tom Chou, Capillary-gravity wave transport over spatially random drift, Wave Motion 35, 107-124, (2002). (postscript, pdf) 16. Tom Chou and Detlef Lohse, Entropy-driven pumping in zeolites and ion channels, Physical Review Letters, 82(17), 3552-3555, (1999). (postscript, pdf) 15. Tom Chou, Kinetics and thermodynamics across single-file pores: solute permeability and rectified osmosis, Journal of Chemical Physics, 110, 606-615, (1999). (postscript, pdf) 14. Tom Chou, Band Structure of Periodically Surface-Scattered Flexural-Gravity Waves, Journal of Fluid Mechanics, 369, 333-350, (1998). (pdf) 13. Tom Chou, How Fast do Fluids Squeeze Through Microscopic Single-File Channels? Physical Review Letters, 80(1), 85-88, (1998). (postscript, pdf) 12. Tom Chou, Liquid Surface Wave Band Structure Instabilities, Physical Review Letters, 79(24), 4802-4805, (1997). (postscript, pdf) 11. E. G. Blackman and Tom Chou, Coupled Vorticity-Magnetic Field Dynamo Instability, Astrophysical Journal, 489, L95-L98, (1997). PMID:10061751 (postscript) 10. Tom Chou, Marko Jaric, and E. D. Siggia, Electrostatics of Lipid Bilayer Bending, Biophysical Journal, 72, 2042-2055, (1997). PMCID:PMC1184399 9. R. V. E. Lovelace and Tom Chou, Counter-rotating accretion disks, Astrophysical Journal, 468, L25-L28, (1996). (postscript) 8. Tom Chou and E. G. Blackman, Magnetic Field Diagnostic for Sonoluminescence, Physical Review Letters, 76(7), (1996). (postscript, pdf) 7. Tom Chou and D. R. Nelson, Dislocation Mediated Melting Near Isostructural Critical Points, Physical Review E, 52(9), (1996). PMID:9964542 6. Tom Chou, S. K. Lucas, and H. A. Stone, Capillary Wave Scattering from a Surfactant Domain, Physics of Fluids, 7(8), 1872, (1995). 5. Tom Chou and D. R. Nelson, Surface Wave Scattering from Nonuniform Interfaces, Journal of Chemical Physics, 101(10), 9022, (1994). 4. Tom Chou and D. R. Nelson, Buckling Instabilities of a Confined Colloid Crystal Layer, Physical Review E 48(6), 4611, (1993). PMID:9961143 3. K.Y. Lee, T. Chou, D.S. Chung, and E. Mazur, Direct Measurement of the Spatial Damping of Capillary Waves at Liquid-Vapor Interfaces, Journal of Physical Chemistry, 97, 12876 (1993). 2. Tom Chou and D. R. Nelson, Buckling of a Confined Colloidal Crystal, in Evolution of Surface and Thin Film Microstructure: Materials Research Society Symposium, 305, Nov. 30-Dec. 4, 1992, Boston, MA. 1. K. Q. Lao, M. D. Person, T. Chou, and L. J. Butler, Emission Spectroscopy of the Predissociative Rydberg B State of CH3I and CD3I at 193.3 nm, Journal of Chemical Physics, 89(6) 3463, (1988). |
